vil_dicom_image Class Reference

#include <vil_dicom.h>

Inheritance diagram for vil_dicom_image:

Detailed Description

Generic image implementation for DICOM files.

Definition at line 40 of file vil_dicom.h.


Public Member Functions
	vil_dicom_image (vil_stream *is, unsigned ni, unsigned nj, unsigned nplanes, vil_pixel_format format)
	vil_dicom_image (vil_stream *is)
	~vil_dicom_image ()
virtual unsigned	nplanes () const
	Dimensions: Planes x ni x nj.
virtual unsigned	ni () const
	Dimensions: Planes x ni x nj.
virtual unsigned	nj () const
	Dimensions: Planes x ni x nj.
virtual enum vil_pixel_format	pixel_format () const
	Pixel Format.
virtual vil_image_view_base_sptr	get_copy_view (unsigned i0, unsigned ni, unsigned j0, unsigned nj) const
	Create a read/write view of a copy of this data.
virtual vil_image_view_base_sptr	get_view (unsigned i0, unsigned ni, unsigned j0, unsigned nj) const
	Create a read/write view of the data.
virtual bool	put_view (const vil_image_view_base &im, unsigned i0, unsigned j0)
	Put the data in this view back into the image source.
char const *	file_format () const
	Return a string describing the file format.
bool	get_property (char const tag, void prop=0) const
	Extra property information.
vil_dicom_header_info const &	header () const
virtual void	correct_manufacturer_discrepancies ()
	correct known manufacturers drop-offs in header data!.
virtual bool	interpret_hologic_header (float &xpixSize, float &ypixSize)
	try and interpret the hologic comments section to extract pixel size.
vil_image_view_base_sptr	get_view () const
	Create a read/write view of all the data.
vil_image_view_base_sptr	get_copy_view () const
	Create a read/write view of a copy of all the data.
bool	put_view (const vil_image_view_base &im)
	Put the data in this view back into the image source at the origin.
virtual bool	view_fits (const vil_image_view_base &im, unsigned i0, unsigned j0)
	Check that a view will fit into the data at the given offset.
Protected Member Functions
void	ref ()
void	unref ()
Protected Attributes
vcl_atomic_count	reference_count_
Private Attributes
vil_dicom_header_info	header_
vil_image_resource_sptr	pixels_
Friends
class	vil_smart_ptr< vil_image_resource >
Related Functions
(Note that these are not member functions.)
template<class destT, class kernelT, class accumT>
vil_image_resource_sptr	vil_convolve_1d (const vil_image_resource_sptr &src_im, const destT, const kernelT *kernel, int k_lo, int k_hi, const accumT, vil_convolve_boundary_option start_option, vil_convolve_boundary_option end_option)
	Create an image_resource object which convolve kernel[x] x in [k_lo,k_hi] with srcT.
template<class destT, class kernelT, class accumT>
vil_image_resource_sptr	vil_correlate_1d (const vil_image_resource_sptr &src_im, const destT, const kernelT *kernel, vcl_ptrdiff_t k_lo, vcl_ptrdiff_t k_hi, const accumT, vil_convolve_boundary_option start_option, vil_convolve_boundary_option end_option)
	Create an image_resource object which correlate kernel[x] x in [k_lo,k_hi] with srcT.
bool	vil_copy_deep (const vil_image_resource_sptr &src, vil_image_resource_sptr &dest)
	Copy src to dest.
vil_image_resource_sptr	vil_crop (const vil_image_resource_sptr &src, unsigned i0, unsigned n_i, unsigned j0, unsigned n_j)
	Crop to a region of src.
vil_image_resource_sptr	vil_decimate (const vil_image_resource_sptr &src, unsigned i_factor, unsigned j_factor=0)
	decimate to a region of src.
vil_image_resource_sptr	vil_load_image_resource (char const *filename)
	Load an image resource object from a file.
vil_image_resource_sptr	vil_new_image_resource (unsigned ni, unsigned nj, vil_image_resource_sptr const &prototype)
	Make a new image, similar format to the prototype.
vil_image_resource_sptr	vil_new_image_resource (vil_stream os, unsigned ni, unsigned nj, unsigned nplanes, vil_pixel_format format, char const file_format)
	Make a new image.
vil_image_resource_sptr	vil_new_image_resource (char const filename, unsigned ni, unsigned nj, vil_image_resource_sptr const &prototype, char const file_format)
	Make a new vil_image_resource, writing to file "filename", size ni x nj, copying pixel format etc from "prototype".
vil_image_resource_sptr	vil_new_image_resource (char const filename, unsigned ni, unsigned nj, unsigned nplanes, vil_pixel_format format, char const file_format)
	Make a new image.
vil_image_resource_sptr	vil_new_image_resource (vil_stream os, unsigned ni, unsigned nj, vil_image_resource_sptr const &prototype, char const file_format)
	Make a new vil_image_resource, writing to stream "os", size ni x nj, copying pixel format etc from "prototype".
vil_image_resource_sptr	vil_new_image_resource (char const filename, unsigned ni, unsigned nj, unsigned nplanes, vil_image_resource_sptr const &prototype, char const format=0)
	Make a new vil_image_resource, writing to file "filename", size ni x nj, copying pixel format etc from "prototype".
vil_image_resource_sptr	vil_new_image_resource (vil_stream os, unsigned ni, unsigned nj, unsigned nplanes, vil_image_resource_sptr const &prototype, char const file_format=0)
	Make a new vil_image_resource, writing to stream "os", size ni x nj, copying pixel format etc from "prototype".
bool	vil_save_image_resource (const vil_image_resource_sptr &ir, char const filename, char const file_format)
	Send vil_image_resource to disk.
bool	vil_save_image_resource (const vil_image_resource_sptr &ir, char const *filename)
	Save vil_image_resource to file, deducing format from filename.

Constructor & Destructor Documentation

vil_dicom_image::vil_dicom_image	(	vil_stream *	is,
		unsigned	ni,
		unsigned	nj,
		unsigned	nplanes,
		vil_pixel_format	format
	)

vil_dicom_image::vil_dicom_image ( vil_stream * is )

vil_dicom_image::~vil_dicom_image ( )

Member Function Documentation

virtual unsigned vil_dicom_image::nplanes ( ) const [virtual]

Dimensions: Planes x ni x nj.

This concept is treated as a synonym to components.

Implements vil_image_resource.

virtual unsigned vil_dicom_image::ni ( ) const [virtual]

Dimensions: Planes x ni x nj.

The number of pixels in each row.

Implements vil_image_resource.

virtual unsigned vil_dicom_image::nj ( ) const [virtual]

Dimensions: Planes x ni x nj.

The number of pixels in each column.

Implements vil_image_resource.

virtual enum vil_pixel_format vil_dicom_image::pixel_format ( ) const [virtual]

Pixel Format.

A standard RGB RGB RGB of chars image has pixel_format() == VIL_PIXEL_FORMAT_BYTE

Implements vil_image_resource.

virtual vil_image_view_base_sptr vil_dicom_image::get_copy_view	(	unsigned	i0,
		unsigned	ni,
		unsigned	j0,
		unsigned	nj
	)			const `[virtual]`

Create a read/write view of a copy of this data.

This function will always return a multi-plane scalar-pixel view of the data.

Returns:: 0 if unable to get view of correct size, or if resource is write-only.

Implements vil_image_resource.

virtual vil_image_view_base_sptr vil_dicom_image::get_view	(	unsigned	i0,
		unsigned	ni,
		unsigned	j0,
		unsigned	nj
	)			const `[virtual]`

Create a read/write view of the data.

Modifying this view might modify the actual data. If you want to modify this data in place, call put_view after you done, and it should work efficiently. This function will always return a multi-plane scalar-pixel view of the data.

Returns:: 0 if unable to get view of correct size, or if resource is write-only.

If you want to fill an existing view (e.g. a window onto some other image), then use

   vil_reformat(data->get_view(..), window);

Reimplemented from vil_image_resource.

virtual bool vil_dicom_image::put_view	(	const vil_image_view_base &	im,
		unsigned	i0,
		unsigned	j0
	)			`[virtual]`

Put the data in this view back into the image source.

The view must be of scalar components. Assign your view to a scalar-component view if this is not the case.

Returns:: false if failed, because e.g. resource is read-only, format of view is not correct (if it is a compound pixel type, try assigning it to a multi-plane scalar pixel view.)

Implements vil_image_resource.

char const* vil_dicom_image::file_format ( ) const [virtual]

Return a string describing the file format.

Only file images have a format, others return 0

Reimplemented from vil_image_resource.

bool vil_dicom_image::get_property	(	char const *	tag,
		void *	prop = `0`
	)			const `[virtual]`

Extra property information.

Implements vil_image_resource.

vil_dicom_header_info const& vil_dicom_image::header ( ) const [inline]

Definition at line 70 of file vil_dicom.h.

virtual void vil_dicom_image::correct_manufacturer_discrepancies ( ) [virtual]

correct known manufacturers drop-offs in header data!.

For example Hologic encode pixel-size in the imageComment! NB if this section starts bloating, use derived classes which override correct_manufacturer_discrepancies

virtual bool vil_dicom_image::interpret_hologic_header	(	float &	xpixSize,
		float &	ypixSize
	)			`[virtual]`

try and interpret the hologic comments section to extract pixel size.

vil_image_view_base_sptr vil_image_resource::get_view ( ) const [inline, inherited]

Create a read/write view of all the data.

Definition at line 69 of file vil_image_resource.h.

vil_image_view_base_sptr vil_image_resource::get_copy_view ( ) const [inline, inherited]

Create a read/write view of a copy of all the data.

Reimplemented in vil_j2k_image, and vil_nitf2_image.

Definition at line 80 of file vil_image_resource.h.

bool vil_image_resource::put_view ( const vil_image_view_base & im ) [inline, inherited]

Put the data in this view back into the image source at the origin.

Definition at line 92 of file vil_image_resource.h.

bool vil_image_resource::view_fits	(	const vil_image_view_base &	im,
		unsigned	i0,
		unsigned	j0
	)			`[virtual, inherited]`

Check that a view will fit into the data at the given offset.

This includes checking that the pixel type is scalar.

Definition at line 30 of file vil_image_resource.cxx.

void vil_image_resource::ref ( ) [inline, protected, inherited]

Definition at line 110 of file vil_image_resource.h.

void vil_image_resource::unref ( ) [inline, protected, inherited]

Definition at line 111 of file vil_image_resource.h.

Friends And Related Function Documentation

friend class vil_smart_ptr< vil_image_resource > [friend, inherited]

Definition at line 109 of file vil_image_resource.h.

template<class destT, class kernelT, class accumT>

vil_image_resource_sptr vil_convolve_1d	(	const vil_image_resource_sptr &	src_im,
		const	destT,
		const kernelT *	kernel,
		int	k_lo,
		int	k_hi,
		const	accumT,
		vil_convolve_boundary_option	start_option,
		vil_convolve_boundary_option	end_option
	)			`[related, inherited]`

Create an image_resource object which convolve kernel[x] x in [k_lo,k_hi] with srcT.

Note:: This function reverses the kernel. If you don't want the kernel reversed, use vil_correlate_1d instead.

Parameters:

kernel

should point to tap 0.

Definition at line 403 of file vil_convolve_1d.h.

template<class destT, class kernelT, class accumT>

vil_image_resource_sptr vil_correlate_1d	(	const vil_image_resource_sptr &	src_im,
		const	destT,
		const kernelT *	kernel,
		vcl_ptrdiff_t	k_lo,
		vcl_ptrdiff_t	k_hi,
		const	accumT,
		vil_convolve_boundary_option	start_option,
		vil_convolve_boundary_option	end_option
	)			`[related, inherited]`

Create an image_resource object which correlate kernel[x] x in [k_lo,k_hi] with srcT.

Note:: This function does not reverse the kernel. If you want the kernel reversed, use vil_convolve_1d instead.

Parameters:

kernel

should point to tap 0.

Definition at line 214 of file vil_correlate_1d.h.

bool vil_copy_deep	(	const vil_image_resource_sptr &	src,
		vil_image_resource_sptr &	dest
	)			`[related, inherited]`

Copy src to dest.

This is useful if you want to copy on image into a window on another image. src and dest must have identical sizes, and pixel-types. Returns false if the copy failed. O(size).

Definition at line 44 of file vil_copy.cxx.

vil_image_resource_sptr vil_crop	(	const vil_image_resource_sptr &	src,
		unsigned	i0,
		unsigned	n_i,
		unsigned	j0,
		unsigned	n_j
	)			`[related, inherited]`

Crop to a region of src.

Definition at line 15 of file vil_crop.cxx.

vil_image_resource_sptr vil_decimate	(	const vil_image_resource_sptr &	src,
		unsigned	i_factor,
		unsigned	j_factor = `0`
	)			`[related, inherited]`

decimate to a region of src.

vil_image_resource_sptr vil_load_image_resource ( char const * filename ) [related, inherited]

Load an image resource object from a file.

Definition at line 52 of file vil_load.cxx.

vil_image_resource_sptr vil_new_image_resource	(	unsigned	ni,
		unsigned	nj,
		vil_image_resource_sptr const &	prototype
	)			`[related, inherited]`

Make a new image, similar format to the prototype.

Definition at line 69 of file vil_new.cxx.

vil_image_resource_sptr vil_new_image_resource	(	vil_stream *	os,
		unsigned	ni,
		unsigned	nj,
		unsigned	nplanes,
		vil_pixel_format	format,
		char const *	file_format = `0`
	)			`[related, inherited]`

Make a new image.

Definition at line 77 of file vil_new.cxx.

vil_image_resource_sptr vil_new_image_resource	(	char const *	filename,
		unsigned	ni,
		unsigned	nj,
		vil_image_resource_sptr const &	prototype,
		char const *	file_format
	)			`[related, inherited]`

Make a new vil_image_resource, writing to file "filename", size ni x nj, copying pixel format etc from "prototype".

Definition at line 104 of file vil_new.cxx.

vil_image_resource_sptr vil_new_image_resource	(	char const *	filename,
		unsigned	ni,
		unsigned	nj,
		unsigned	nplanes,
		vil_pixel_format	format,
		char const *	file_format = `0`
	)			`[related, inherited]`

Make a new image.

Definition at line 123 of file vil_new.cxx.

vil_image_resource_sptr vil_new_image_resource	(	vil_stream *	os,
		unsigned	ni,
		unsigned	nj,
		vil_image_resource_sptr const &	prototype,
		char const *	file_format
	)			`[related, inherited]`

Make a new vil_image_resource, writing to stream "os", size ni x nj, copying pixel format etc from "prototype".

Definition at line 143 of file vil_new.cxx.

vil_image_resource_sptr vil_new_image_resource	(	char const *	filename,
		unsigned	ni,
		unsigned	nj,
		unsigned	nplanes,
		vil_image_resource_sptr const &	prototype,
		char const *	format = `0`
	)			`[related, inherited]`

Make a new vil_image_resource, writing to file "filename", size ni x nj, copying pixel format etc from "prototype".

vil_image_resource_sptr vil_new_image_resource	(	vil_stream *	os,
		unsigned	ni,
		unsigned	nj,
		unsigned	nplanes,
		vil_image_resource_sptr const &	prototype,
		char const *	file_format = `0`
	)			`[related, inherited]`

Make a new vil_image_resource, writing to stream "os", size ni x nj, copying pixel format etc from "prototype".

bool vil_save_image_resource	(	const vil_image_resource_sptr &	ir,
		char const *	filename,
		char const *	file_format
	)			`[related, inherited]`

Send vil_image_resource to disk.

bool vil_save_image_resource	(	const vil_image_resource_sptr &	ir,
		char const *	filename
	)			`[related, inherited]`

Save vil_image_resource to file, deducing format from filename.

Member Data Documentation

vil_dicom_header_info vil_dicom_image::header_ [private]

Definition at line 42 of file vil_dicom.h.

vil_image_resource_sptr vil_dicom_image::pixels_ [private]

Definition at line 43 of file vil_dicom.h.

vcl_atomic_count vil_image_resource::reference_count_ [protected, inherited]

Definition at line 114 of file vil_image_resource.h.

The documentation for this class was generated from the following file:

core/vil/file_formats/vil_dicom.h

Generated on Tue Oct 7 05:07:48 2008 for core/vil by

1.5.1

vil_dicom_image Class Reference

Detailed Description

Public Member Functions

Protected Member Functions

Protected Attributes

Private Attributes

Friends

Related Functions

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation